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1

Cytokine-mediated communication: a quantitative appraisal of immune complexity

Altan-Bonnet, Grégoire, Mukherjee, Ratnadeep

Journal:

Nature Reviews Immunology

Year:

2019

Language:

english

File:

PDF, 1.45 MB

english, 2019

2

Quantifying the Dynamics of Hematopoiesis by In Vivo IdU Pulse‐Chase, Mass Cytometry, and Mathematical Modeling

Erez, Amir, Mukherjee, Ratnadeep, Altan‐Bonnet, Grégoire

Journal:

Cytometry Part A

Year:

2019

Language:

english

File:

PDF, 2.71 MB

english, 2019

3

Chemokines enhance immunity by guiding naive CD8+ T cells to sites of CD4+ T cell–dendritic cell interaction

Castellino, Flora, Huang, Alex Y., Altan-Bonnet, Grégoire, Stoll, Sabine, Scheinecker, Clemens, Germain, Ronald N.

Journal:

Year:

2006

Language:

english

File:

PDF, 520 KB

english, 2006

4

A cascade of protein kinase C isozymes promotes cytoskeletal polarization in T cells

Quann, Emily J, Liu, Xin, Altan-Bonnet, Grégoire, Huse, Morgan

Journal:

Nature Immunology

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

5

Quantitative challenges in understanding ligand discrimination by αβ T cells

Ofer Feinerman, Ronald N. Germain, Grégoire Altan-Bonnet

Journal:

Molecular Immunology

Year:

2008

Language:

english

File:

PDF, 1020 KB

english, 2008

6

Bubble Dynamics in Double-Stranded DNA

Altan-Bonnet, Grégoire, Libchaber, Albert, Krichevsky, Oleg

Journal:

Physical Review Letters

Year:

2003

Language:

english

File:

PDF, 151 KB

english, 2003

7

Diversity training for signal transduction: leveraging cell-to-cell variability to dissect cellular signaling, differentiation and death

Cotari, Jesse W, Voisinne, Guillaume, Altan-Bonnet, Grégoire

Journal:

Current Opinion in Biotechnology

Year:

2013

Language:

english

File:

PDF, 990 KB

english, 2013

8

T cell responses to antigen: hasty proposals resolved through long engagements

Tkach, Karen, Altan-Bonnet, Grégoire

Journal:

Current Opinion in Immunology

Year:

2013

Language:

english

File:

PDF, 349 KB

english, 2013

9

Nucleic acid hybridization: Robust sequence discrimination

Altan-Bonnet, Grégoire, Kramer, Fred Russell

Journal:

Nature Chemistry

Year:

2012

Language:

english

File:

PDF, 194 KB

english, 2012

10

Inhibition of c-Rel Activity Prevents Graft-Versus-Host Disease without Compromising Tumor Immunity

Shono, Yusuke, Tuckett, Andrea Z., Liou, Hsiou-Chi, Altan-Bonnet, Gregoire, Tsai, Jennifer J., Smith, Odette M., West, Mallory L., Singer, Natalie V., van den Brink, Marcel R.M., Zakrzewski, Johannes

Journal:

Biology of Blood and Marrow Transplantation

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

11

Discerning aggregation in homogeneous ensembles: A general description of photon counting spectroscopy in diffusing systems

Ren, Hai-Cang, Goddard, Noel L., Altan-Bonnet, Grégoire, Libchaber, Albert

Journal:

Physical Review E

Year:

2004

Language:

english

File:

PDF, 179 KB

english, 2004

12

Mechanistic Model of Natural Killer Cell Proliferative Response to IL-15 Receptor Stimulation

Zhao, Yun M., French, Anthony R., Altan-Bonnet, Grégoire

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.83 MB

english, 2013

13

Quantifying the Length and Variance of the Eukaryotic Cell Cycle Phases by a Stochastic Model and Dual Nucleoside Pulse Labelling

Weber, Tom Serge, Jaehnert, Irene, Schichor, Christian, Or-Guil, Michal, Carneiro, Jorge, Altan-Bonnet, Grégoire

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

14

Competition for IL-2 between Regulatory and Effector T Cells to Chisel Immune Responses

Höfer, Thomas, Krichevsky, Oleg, Altan-Bonnet, Grégoire

Journal:

Frontiers in Immunology

Year:

2012

Language:

english

File:

PDF, 745 KB

english, 2012

15

Modeling T Cell Antigen Discrimination Based on Feedback Control of Digital ERK Responses

Altan-Bonnet, Grégoire, Germain, Ronald N.

Journal:

Year:

2005

Language:

english

File:

PDF, 501 KB

english, 2005

16

Clonal Abundance of Tumor-Specific CD4+ T Cells Potentiates Efficacy and Alters Susceptibility to Exhaustion

Malandro, Nicole, Budhu, Sadna, Kuhn, Nicholas F., Liu, Cailian, Murphy, Judith T., Cortez, Czrina, Zhong, Hong, Yang, Xia, Rizzuto, Gabrielle, Altan-Bonnet, Grégoire, Merghoub, Taha, Wolchok, Jedd D.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.46 MB

english, 2016

17

T Cells Integrate Local and Global Cues to Discriminate between Structurally Similar Antigens

Voisinne, Guillaume, Nixon, Briana G., Melbinger, Anna, Gasteiger, Georg, Vergassola, Massimo, Altan-Bonnet, Grégoire

Journal:

Year:

2015

Language:

english

File:

PDF, 3.29 MB

english, 2015

18

The Case for Absolute Ligand Discrimination: Modeling Information Processing and Decision by Immune T Cells

François, Paul, Altan-Bonnet, Grégoire

Journal:

Journal of Statistical Physics

Year:

2016

Language:

english

File:

PDF, 1.65 MB

english, 2016

19

Diagnosing Leukemia Through Entropy

Vogel, Robert, Ziegler, Carly, Altan-Bonnet, Grégoire

Journal:

Physics (American Physical Society)

Year:

2014

Language:

english

File:

PDF, 1.70 MB

english, 2014

20

Dichotomy of cellular inhibition by small-molecule inhibitors revealed by single-cell analysis

Vogel, Robert M., Erez, Amir, Altan-Bonnet, Grégoire

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

21

Lymphocytic division clocked up by Myc

Erez, Amir, Altan-Bonnet, Grégoire

Journal:

Immunology & Cell Biology

Year:

2017

Language:

english

File:

PDF, 174 KB

english, 2017

22

Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response

Feinerman, Ofer, Jentsch, Garrit, Tkach, Karen E, Coward, Jesse W, Hathorn, Matthew M, Sneddon, Michael W, Emonet, Thierry, Smith, Kendall A, Altan-Bonnet, Grégoire

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 3.53 MB

english, 2010

23

A Tunable Diffusion-Consumption Mechanism of Cytokine Propagation Enables Plasticity in Cell-to-Cell Communication in the Immune System

Oyler-Yaniv, Alon, Oyler-Yaniv, Jennifer, Whitlock, Benjamin M., Liu, Zhiduo, Germain, Ronald N., Huse, Morgan, Altan-Bonnet, Grégoire, Krichevsky, Oleg

Journal:

Year:

2017

Language:

english

File:

PDF, 2.78 MB

english, 2017

24

Catch and Release of Cytokines Mediated by Tumor Phosphatidylserine Converts Transient Exposure into Long-Lived Inflammation

Oyler-Yaniv, Jennifer, Oyler-Yaniv, Alon, Shakiba, Mojdeh, Min, Nina K., Chen, Ying-Han, Cheng, Sheue-yann, Krichevsky, Oleg, Altan-Bonnet, Nihal, Altan-Bonnet, Grégoire

Journal:

Year:

2017

Language:

english

File:

PDF, 4.34 MB

english, 2017

25

Correction: Annular PIP 3 accumulation controls actin architecture and modulates cytotoxicity at the immunological synapse

Le Floc’h, Audrey, Tanaka, Yoshihiko, Bantilan, Niels S., Voisinne, Guillaume, Altan-Bonnet, Grégoire, Fukui, Yoshinori, Huse, Morgan

Journal:

Journal of Experimental Medicine

Year:

2017

File:

PDF, 670 KB

2017

26

EGFR and PDGFRA co-expression and heterodimerization in glioblastoma tumor sphere lines

Chakravarty, Debyani, Pedraza, Alicia M., Cotari, Jesse, Liu, Angela H., Punko, Diana, Kokroo, Aushim, Huse, Jason T., Altan-Bonnet, Gregoire, Brennan, Cameron W.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 5.06 MB

english, 2017

27

Modeling of cytometry data in logarithmic space: When is a bimodal distribution not bimodal?

Erez, Amir, Vogel, Robert, Mugler, Andrew, Belmonte, Andrew, Altan-Bonnet, Grégoire

Journal:

Cytometry Part A

Year:

2018

Language:

english

File:

PDF, 621 KB

english, 2018

28

Noise-Driven Causal Inference in Biomolecular Networks

Prill, Robert J., Vogel, Robert, Cecchi, Guillermo A., Altan-Bonnet, Grégoire, Stolovitzky, Gustavo, de la Fuente, Alberto

Journal:

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

29

Universality of biochemical feedback and its application to immune cells

Erez, Amir, Byrd, Tommy A., Vogel, Robert M., Altan-Bonnet, Grégoire, Mugler, Andrew

Journal:

Physical Review E

Year:

2019

File:

PDF, 828 KB

2019

30

Universality of biochemical feedback and its application to immune cells

Erez, Amir, Byrd, Tommy A., Vogel, Robert M., Altan-Bonnet, Grégoire, Mugler, Andrew

Journal:

Physical Review E

Year:

2019

Language:

english

File:

PDF, 828 KB

english, 2019

31

Quantifying the Dynamics of Hematopoiesis by In Vivo IdU Pulse‐Chase, Mass Cytometry, and Mathematical Modeling

Erez, Amir, Mukherjee, Ratnadeep, Altan‐Bonnet, Grégoire

Journal:

Cytometry Part A

Year:

2019

File:

PDF, 2.71 MB

2019

32

IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus

Hemmers, Saskia, Schizas, Michail, Azizi, Elham, Dikiy, Stanislav, Zhong, Yi, Feng, Yongqiang, Altan-Bonnet, Grégoire, Rudensky, Alexander Y.

Journal:

Journal of Experimental Medicine

Year:

2019

Language:

english

File:

PDF, 2.79 MB

english, 2019

33

Critical slowing down in biochemical networks with feedback

Byrd, Tommy A., Erez, Amir, Vogel, Robert M., Peterson, Curtis, Vennettilli, Michael, Altan-Bonnet, Grégoire, Mugler, Andrew

Journal:

Physical Review E

Year:

2019

Language:

english

File:

PDF, 1.06 MB

english, 2019

34

TGFβ blocks IFNα/β release and tumor rejection in spontaneous mammary tumors

Guerin, Marion V., Regnier, Fabienne, Feuillet, Vincent, Vimeux, Lene, Weiss, Julia M., Bismuth, Georges, Altan-Bonnet, Gregoire, Guilbert, Thomas, Thoreau, Maxime, Finisguerra, Veronica, Donnadieu, E

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.72 MB

english, 2019

35

TGFβ blocks IFNα/β release and tumor rejection in spontaneous mammary tumors

Guerin, Marion V., Regnier, Fabienne, Feuillet, Vincent, Vimeux, Lene, Weiss, Julia M., Bismuth, Georges, Altan-Bonnet, Gregoire, Guilbert, Thomas, Thoreau, Maxime, Finisguerra, Veronica, Donnadieu, E

Journal:

Nature Communications

Year:

2019

File:

PDF, 1.72 MB

2019

36

Inducible nitric oxide synthase-derived extracellular nitric oxide flux regulates proinflammatory responses at the single cell level

Somasundaram, Veena, Gilmore, Anne C., Basudhar, Debashree, Palmieri, Erika Mariana, Scheiblin, David A., Heinz, William F., Cheng, Robert.Y.S., Ridnour, Lisa A., Altan-Bonnet, Grégoire, Lockett, Step

Journal:

Year:

2020

Language:

english

File:

PDF, 3.55 MB

english, 2020